Load data

Loading Case projection Data

Current growth estimates for observed new case data

##      [,1]                                    [,2]                     
## [1,] "New confirmed cases by infection date" "140 (49 -- 380)"        
## [2,] "Expected change in daily cases"        "Unsure"                 
## [3,] "Effective reproduction no."            "0.85 (0.49 -- 1.4)"     
## [4,] "Rate of growth"                        "-0.043 (-0.16 -- 0.099)"
## [5,] "Doubling/halving time (days)"          "-16 (7 -- -4.5)"

Plot of case projection data for Rt

Plot of case projection data over time

Load the hospital case data

Current growth rate estimates for hospital census data

##      [,1]                                    [,2]                     
## [1,] "New confirmed cases by infection date" "43 (18 -- 99)"          
## [2,] "Expected change in daily cases"        "Unsure"                 
## [3,] "Effective reproduction no."            "0.77 (0.46 -- 1.2)"     
## [4,] "Rate of growth"                        "-0.067 (-0.16 -- 0.066)"
## [5,] "Doubling/halving time (days)"          "-10 (11 -- -4.3)"

Plot of hospital case data for Rt projection

#Plot of Hospital cases over time

Load the waste water data

Current growth estimates of waste water data

##      [,1]                                    [,2]                    
## [1,] "New confirmed cases by infection date" "466 (204 -- 1170)"     
## [2,] "Expected change in daily cases"        "Unsure"                
## [3,] "Effective reproduction no."            "0.86 (0.55 -- 1.3)"    
## [4,] "Rate of growth"                        "-0.04 (-0.13 -- 0.076)"
## [5,] "Doubling/halving time (days)"          "-17 (9.1 -- -5.2)"

Plot of waste water data for Rt projection

Plot of waste water data for viral signal over time

Creating datasets to merge from hospital, cases and waste water data

Loading the forecasted hospital case data from September2021 to present for 10 days reporting delay

#Plot of Hospital cases over time from September 2021 to present with delay reporting time of 10 days

Projection of Rt over time with reporting delay of 10 days

Loading the forecasted hospital case data from September2021 to present for 14 days reporting delay

#Plot of Hospital cases over time from September 2021 to present with delay reporting time of 14 days

Projection of Rt over time with reporting delay of 14 days